Nature ecology & evolution
Volume 4 Issue 4, April 2020
City heat
Genetically distinct populations of urban lizards, such as male crested anoles (Anolis cristatellus) in Puerto Rico, provide an opportunity to understand rapid parallel evolution of complex thermal traits. A single non-synonymous polymorphism associated with heat tolerance plasticity may explain how these urban lizards can endure higher temperatures than populations in forests.
Image: Kristin Winchell. Cover Design: Lauren Heslop.
Editorial
- Anselm Schneider
- , Jennifer Hinton
- […]
- & Ana Paula Dutra Aguiar
- Dror Etzion
- Carl Folke
- , Henrik Österblom
- […]
- & Aart de Zeeuw
- Matthew J. Grainger
- , Friederike C. Bolam
- […]
- & Erlend B. Nilsen
- Shinichi Nakagawa
- , Adam G. Dunn
- […]
- & Neal R. Haddaway
- Davide M. Dominoni
- , Wouter Halfwerk
- […]
- & Jesse R. Barber
- Wesley M. Knapp
- , Anne Frances
- […]
- & Kathryn Kennedy
- Aelys M. Humphreys
- , Maria S. Vorontsova
- […]
- & Eimear Nic Lughadha
- M. Brock Fenton
- , Daniel G. Streicker
- […]
- & Kevin M. Bakker
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Brief Communication | 24 February 2020
Widespread patterns of gene loss in the evolution of the animal kingdom
An analysis of 102 genomes shows remarkable levels of gene loss in ecdysozoans and deuterostomes and large genome novelties in deuterostomes and protostomes.
- Cristina Guijarro-Clarke
- , Peter W. H. Holland
- & Jordi Paps
Article | 28 January 2020
Gene gain and loss across the metazoan tree of life
Phylogenomic analysis including representatives of all metazoan phyla shows gene duplication followed by differential gene loss throughout the animal tree of life.
- Rosa Fernández
- & Toni Gabaldón
Article | 02 March 2020
A hydrogen-dependent geochemical analogue of primordial carbon and energy metabolism
Three iron minerals found in alkaline hydrothermal vents are shown to convert CO2 and H2 into formate, acetate and pyruvate in water, suggesting that such reactions could have paved the way for early metabolism.
- Martina Preiner
- , Kensuke Igarashi
- […]
- & William F. Martin
Article | 24 February 2020
A one-billion-year-old multicellular chlorophyte
Filamentous macrofossils from the one-billion-year-old Nanfen Formation of northern China are interpreted as a new species of early multicellular green algae.
- Qing Tang
- , Ke Pang
- […]
- & Shuhai Xiao
Article | 02 March 2020
Directed species loss reduces community productivity in a subtropical forest biodiversity experiment
A biodiversity–ecosystem functioning experiment in a young subtropical forest shows that, at high species richness, directed but not random species loss leads to pronounced productivity decrease.
- Yuxin Chen
- , Yuanyuan Huang
- […]
- & Bernhard Schmid
Article | 02 March 2020
Higher temperatures generically favour slower-growing bacterial species in multispecies communities
Developing a model of competitive outcomes in bacterial communities, the authors show that higher temperatures favour slower-growing species. They then confirm these predictions empirically in a series of two- and three-species coculture experiments.
- Simon Lax
- , Clare I. Abreu
- & Jeff Gore
Article | 09 March 2020
Coexistence of nestedness and modularity in host–pathogen infection networks
A theoretical framework is developed, demonstrating that local modularity can coexist with large-scale nestedness in host–pathogen networks, and is validated on empirical data from plant–virus interactions in the field.
- Sergi Valverde
- , Blai Vidiella
- […]
- & Fernando García-Arenal
Article | 02 March 2020
Community rescue in experimental phytoplankton communities facing severe herbicide pollution
A mesocosm experiment shows that prior exposure to a herbicide stressor facilitates subsequent community rescue, whereas high community biomass does not.
- Vincent Fugère
- , Marie-Pier Hébert
- […]
- & Andrew Gonzalez
Article | 02 March 2020
Dissimilation of synonymous codon usage bias in virus–host coevolution due to translational selection
This study shows repulsion between virus and host codon usage bias when they are too similar, due to increased viral expression leading to levels of tRNA consumption that impede host translation.
- Feng Chen
- , Peng Wu
- […]
- & Jian-Rong Yang
Article | 09 March 2020
Chance and necessity in the pleiotropic consequences of adaptation for budding yeast
Natural selection and chance both determine pleiotropic effects of mutations in different environments. To investigate the pleiotropic consequences of adaptation, the authors evolved 20 replicate populations of the yeast Saccharomyces cerevisiae in 11 laboratory environments and measured their fitness in multiple conditions.
- Elizabeth R. Jerison
- , Alex N. Nguyen Ba
- […]
- & Sergey Kryazhimskiy
Article | 09 March 2020
Gene amplification as a form of population-level gene expression regulation
Experimental evolution in engineered Escherichia coli shows that amplification-mediated gene expression tuning, resulting from intrinsic instability of copy-number mutations, is a mechanism of gene expression regulation in fluctuating environments.
- I. Tomanek
- , R. Grah
- […]
- & C. C. Guet
Article | 02 March 2020
Hybridization and introgression drive genome evolution of Dutch elm disease pathogens
Genome analysis of fungi responsible for Dutch elm disease shows that introgression has contributed to genomic diversity and has impacted fitness-related traits in these pathogens.
- Pauline Hessenauer
- , Anna Fijarczyk
- […]
- & Christian R. Landry
Article | 16 March 2020
The evolutionary origin of visual and somatosensory representation in the vertebrate pallium
This study uses isolated eye–brain preparations to show topographic visual and somatosensory representation in the lamprey pallium, which is similar to the basic sensorimotor representation of the mammalian neocortex.
- Shreyas M. Suryanarayana
- , Juan Pérez-Fernández
- […]
- & Sten Grillner
Article | 09 March 2020
Parallel selection on thermal physiology facilitates repeated adaptation of city lizards to urban heat islands
Analysing phenotypic and genomic differences between urban and rural lizards, the authors identify a single non-synonymous polymorphism associated with heat tolerance plasticity that may explain how urban lizards can endure higher temperatures compared to those in forests.
- Shane C. Campbell-Staton
- , Kristin M. Winchell
- […]
- & Julian Catchen
Amendments & Corrections
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Author Correction | 10 March 2020
Author Correction: Historical contingency shapes adaptive radiation in Antarctic fishes
- Jacob M. Daane
- , Alex Dornburg
- […]
- & Matthew P. Harris
-
Author Correction | 13 March 2020
Author Correction: Directed species loss reduces community productivity in a subtropical forest biodiversity experiment
- Yuxin Chen
- , Yuanyuan Huang
- […]
- & Bernhard Schmid
-
Publisher Correction | 27 February 2020
Publisher Correction: Widespread patterns of gene loss in the evolution of the animal kingdom
- Cristina Guijarro-Clarke
- , Peter W. H. Holland
- & Jordi Paps
-
Publisher Correction | 09 March 2020
Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life
- Rachael V. Gallagher
- , Daniel S. Falster
- […]
- & Brian J. Enquist
-
Publisher Correction | 16 March 2020
Publisher Correction: Short-range interactions govern the dynamics and functions of microbial communities
- Alma Dal Co
- , Simon van Vliet
- […]
- & Martin Ackermann
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Editorial | 23 March 2020
Synthesis revolution
Evidence synthesis facilitates a more robust understanding of generalities in ecology and evolution, as well as the effectiveness of conservation interventions. However, as synthesis methods become embedded in research workflows, it is imperative that the next generation of researchers receives sufficient training.
Correspondence
Correspondence | 28 February 2020
Can transnational corporations leverage systemic change towards a ‘sustainable’ future?
Correspondence | 28 February 2020
Corporate engagement with the natural environment
Correspondence | 28 February 2020
An invitation for more research on transnational corporations and the biosphere
Comment & Opinion
Comment | 23 March 2020
Evidence synthesis for tackling research waste
There is an immediate need for a change in research workflows so that pre-existing knowledge is better used in designing new research. A formal assessment of the accumulated knowledge prior to research approval would reduce the waste of already limited resources caused by asking low priority questions.
Comment | 23 March 2020
A new ecosystem for evidence synthesis
Synthesizing evidence is an essential part of scientific progress, but it is often done in a slow and uncoordinated manner, sometimes producing misleading conclusions. Here, we propose the idea of an ‘open synthesis community’ to resolve this pressing issue.
Reviews
Perspective | 16 March 2020
Why conservation biology can benefit from sensory ecology
Anthropogenic sensory pollutants, such as noise, light and chemicals, are affecting biodiversity. This Perspective uses an understanding of animal sensory ecology to explore how these impacts can be mitigated.
Research
Matters Arising | 09 March 2020
Regional records improve data quality in determining plant extinction rates
Matters Arising | 09 March 2020
Reply to: Regional records improve data quality in determining plant extinction rates
Matters Arising | 16 March 2020
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